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» Sequence Comparison Using a Relational Database Approach
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BMCBI
2010
161views more  BMCBI 2010»
15 years 20 days ago
FRASS: the web-server for RNA structural comparison
Background: The impressive increase of novel RNA structures, during the past few years, demands automated methods for structure comparison. While many algorithms handle only small...
Svetlana Kirillova, Silvio C. E. Tosatto, Oliviero...
131
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BMCBI
2010
121views more  BMCBI 2010»
15 years 20 days ago
MS4 - Multi-Scale Selector of Sequence Signatures: An alignment-free method for classification of biological sequences
Background: While multiple alignment is the first step of usual classification schemes for biological sequences, alignment-free methods are being increasingly used as alternatives...
Eduardo Corel, Florian Pitschi, Ivan Laprevotte, G...
103
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DEXA
2006
Springer
151views Database» more  DEXA 2006»
15 years 2 months ago
An Incremental Refining Spatial Join Algorithm for Estimating Query Results in GIS
Geographic information systems (GIS) must support large georeferenced data sets. Due to the size of these data sets finding exact answers to spatial queries can be very time consum...
Wan D. Bae, Shayma Alkobaisi, Scott T. Leutenegger
124
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BMCBI
2005
128views more  BMCBI 2005»
15 years 14 days ago
Transformation and other factors of the peptide mass spectrometry pairwise peak-list comparison process
Background: Biological Mass Spectrometry is used to analyse peptides and proteins. A mass spectrum generates a list of measured mass to charge ratios and intensities of ionised pe...
Witold E. Wolski, Maciej Lalowski, Peter Martus, R...
111
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BMCBI
2008
104views more  BMCBI 2008»
15 years 20 days ago
ReRep: Computational detection of repetitive sequences in genome survey sequences (GSS)
Background: Genome survey sequences (GSS) offer a preliminary global view of a genome since, unlike ESTs, they cover coding as well as non-coding DNA and include repetitive region...
Thomas D. Otto, Leonardo H. F. Gomes, Marcelo Alve...