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» Sequence Comparison Using a Relational Database Approach
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111
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BMCBI
2007
153views more  BMCBI 2007»
15 years 21 days ago
Can Clustal-style progressive pairwise alignment of multiple sequences be used in RNA secondary structure prediction?
Background: In ribonucleic acid (RNA) molecules whose function depends on their final, folded three-dimensional shape (such as those in ribosomes or spliceosome complexes), the se...
Amelia B. Bellamy-Royds, Marcel Turcotte
106
Voted
CIVR
2006
Springer
172views Image Analysis» more  CIVR 2006»
15 years 4 months ago
Retrieving Shapes Efficiently by a Qualitative Shape Descriptor: The Scope Histogram
Abstract. Efficient image retrieval from large image databases is a challenging problem. In this paper we present a method offering constant time complexity for the comparison of t...
Arne Schuldt, Björn Gottfried, Otthein Herzog
103
Voted
BMCBI
2008
164views more  BMCBI 2008»
15 years 21 days ago
Word correlation matrices for protein sequence analysis and remote homology detection
Background: Classification of protein sequences is a central problem in computational biology. Currently, among computational methods discriminative kernel-based approaches provid...
Thomas Lingner, Peter Meinicke
86
Voted
IBPRIA
2003
Springer
15 years 5 months ago
Comparison of Log-linear Models and Weighted Dissimilarity Measures
Abstract. We compare two successful discriminative classification algorithms on three databases from the UCI and STATLOG repositories. The two approaches are the log-linear model ...
Daniel Keysers, Roberto Paredes, Enrique Vidal, He...
96
Voted
BMCBI
2007
112views more  BMCBI 2007»
15 years 21 days ago
PFAAT version 2.0: A tool for editing, annotating, and analyzing multiple sequence alignments
Background: By virtue of their shared ancestry, homologous sequences are similar in their structure and function. Consequently, multiple sequence alignments are routinely used to ...
Daniel R. Caffrey, Paul H. Dana, Vidhya Mathur, Ma...