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» Sequence Complexity for Biological Sequence Analysis
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BMCBI
2010
99views more  BMCBI 2010»
14 years 10 months ago
Different effects of the probe summarization algorithms PLIER and RMA on high-level analysis of Affymetrix exon arrays
Background: Alternative splicing is an important mechanism that increases protein diversity and functionality in higher eukaryotes. Affymetrix exon arrays are a commercialized pla...
Yi Qu, Fei He, Yuchen Chen
NAR
2008
138views more  NAR 2008»
14 years 9 months ago
TarO: a target optimisation system for structural biology
TarO (http://www.compbio.dundee.ac.uk/taro) offers a single point of reference for key bioinformatics analyses relevant to selecting proteins or domains for study by structural bi...
Ian M. Overton, C. A. Johannes van Niekerk, Lester...
IPPS
2008
IEEE
15 years 4 months ago
On the Effectiveness of Rebuilding RNA Secondary Structures from Sequence Chunks
Despite the computing power of emerging technologies, predicting long RNA secondary structures with thermodynamics-based methods is still infeasible, especially if the structures ...
Michela Taufer, Thamar Solorio, Abel Licon, David ...
EMNLP
2009
14 years 7 months ago
On the Role of Lexical Features in Sequence Labeling
We use the technique of SVM anchoring to demonstrate that lexical features extracted from a training corpus are not necessary to obtain state of the art results on tasks such as N...
Yoav Goldberg, Michael Elhadad
CPM
2005
Springer
97views Combinatorics» more  CPM 2005»
15 years 3 months ago
On the Complexity of Sparse Exon Assembly
Gene structure prediction is one of the most important problems in computational molecular biology. It involves two steps: the first is finding the evidence (e.g. predicting spl...
Carmel Kent, Gad M. Landau, Michal Ziv-Ukelson