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» Sequence Complexity for Biological Sequence Analysis
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IEEEIAS
2009
IEEE
15 years 4 months ago
Fuzzy Intrusion Detection System via Data Mining Technique with Sequences of System Calls
: There are two main approaches for implementing IDS; Host based and Network based. While the former is implemented in form of software deployed on a host, the latter, usually is b...
Mohammad Akbarpour Sekeh, Mohd. Aizani Bin Maarof
WPES
2003
ACM
15 years 3 months ago
Secure and private sequence comparisons
We give an efficient protocol for sequence comparisons of the edit-distance kind, such that neither party reveals anything about their private sequence to the other party (other t...
Mikhail J. Atallah, Florian Kerschbaum, Wenliang D...
BMCBI
2006
145views more  BMCBI 2006»
14 years 10 months ago
Fast-Find: A novel computational approach to analyzing combinatorial motifs
Background: Many vital biological processes, including transcription and splicing, require a combination of short, degenerate sequence patterns, or motifs, adjacent to defined seq...
Micah Hamady, Erin Peden, Rob Knight, Ravinder Sin...
CORR
2004
Springer
111views Education» more  CORR 2004»
14 years 9 months ago
Finding Approximate Palindromes in Strings Quickly and Simply
: Described are two algorithms to find long approximate palindromes in a string, for example a DNA sequence. A simple algorithm requires O(n)space and almost always runs in O(k.n)-...
L. Allison
BMCBI
2010
152views more  BMCBI 2010»
14 years 10 months ago
A high-throughput de novo sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry
Background: High-resolution tandem mass spectra can now be readily acquired with hybrid instruments, such as LTQ-Orbitrap and LTQ-FT, in high-throughput shotgun proteomics workflo...
Chongle Pan, Byung-Hoon Park, William H. McDonald,...