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» Sequence Complexity for Biological Sequence Analysis
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ISMB
1993
14 years 11 months ago
Representation for Discovery of Protein Motifs
There are several dimensions and levels of complexity in which information on protein motifs may be available. For example, onedimensional sequence motifs may be associated with s...
Darrell Conklin, Suzanne Fortier, Janice I. Glasgo...
BMCBI
2008
117views more  BMCBI 2008»
14 years 10 months ago
RNACompress: Grammar-based compression and informational complexity measurement of RNA secondary structure
Background: With the rapid emergence of RNA databases and newly identified non-coding RNAs, an efficient compression algorithm for RNA sequence and structural information is neede...
Qi Liu, Yu Yang, Chun Chen, Jiajun Bu, Yin Zhang, ...
RECOMB
2009
Springer
15 years 10 months ago
Storage and Retrieval of Individual Genomes
A repetitive sequence collection is one where portions of a base sequence of length n are repeated many times with small variations, forming a collection of total length N. Example...
Gonzalo Navarro, Jouni Sirén, Niko Väl...
RECOMB
2005
Springer
15 years 10 months ago
Using Multiple Alignments to Improve Gene Prediction
The multiple species de novo gene prediction problem can be stated as follows: given an alignment of genomic sequences from two or more organisms, predict the location and structur...
Samuel S. Gross, Michael R. Brent
ICIP
2007
IEEE
15 years 11 months ago
Complexity-Rate-Distortion Analysis of Backward Channel Aware Wyner-Ziv Video Coding
Many Wyner-Ziv video coding (WZVC) schemes encode a video sequence into two types of frames, key frames and Wyner-Ziv frames. We have previously presented a Wyner-Ziv video coding...
Limin Liu, Zhen Li, Edward J. Delp