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» Sequence Complexity for Biological Sequence Analysis
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BMCBI
2006
100views more  BMCBI 2006»
14 years 9 months ago
Towards a better solution to the shortest common supersequence problem: the deposition and reduction algorithm
Background: The problem of finding a Shortest Common Supersequence (SCS) of a set of sequences is an important problem with applications in many areas. It is a key problem in biol...
Kang Ning, Hon Wai Leong
VLDB
2007
ACM
128views Database» more  VLDB 2007»
15 years 10 months ago
Periscope/SQ: Interactive Exploration of Biological Sequence Databases
Life science laboratories today have to rely on procedural techniques to store and manage large sequence datasets. Procedural techniques are cumbersome to use and are often very i...
Sandeep Tata, Willis Lang, Jignesh M. Patel
BMCBI
2002
109views more  BMCBI 2002»
14 years 9 months ago
Kangaroo - A pattern-matching program for biological sequences
Background: Biologists are often interested in performing a simple database search to identify proteins or genes that contain a well-defined sequence pattern. Many databases do no...
Doron Betel, Christopher W. V. Hogue
BIBM
2009
IEEE
113views Bioinformatics» more  BIBM 2009»
15 years 1 months ago
Fast Motif Selection for Biological Sequences
—We consider the problem of identifying motifs, recurring or conserved patterns, in the sets of biological sequences. To solve this task, we present new deterministic and exact a...
Pavel P. Kuksa, Vladimir Pavlovic
RECOMB
2008
Springer
15 years 10 months ago
Integrating Sequence and Topology for Efficient and Accurate Detection of Horizontal Gene Transfer
Abstract. One phylogeny-based approach to horizontal gene transfer (HGT) detection entails comparing the topology of a gene tree to that of the species tree, and using their differ...
Cuong Than, Guohua Jin, Luay Nakhleh