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» Sequence Database Search Using Jumping Alignments
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BMCBI
2006
153views more  BMCBI 2006»
14 years 10 months ago
2DDB - a bioinformatics solution for analysis of quantitative proteomics data
Background: We present 2DDB, a bioinformatics solution for storage, integration and analysis of quantitative proteomics data. As the data complexity and the rate with which it is ...
Lars Malmström, György Marko-Varga, Guni...
ICDE
1999
IEEE
134views Database» more  ICDE 1999»
15 years 11 months ago
On Similarity-Based Queries for Time Series Data
We study similarity queries for time series data where similarity is defined in terms of a set of linear transformations on the Fourier series representation of a sequence. We hav...
Davood Rafiei
112
Voted
SIGMOD
1997
ACM
134views Database» more  SIGMOD 1997»
15 years 2 months ago
Similarity-Based Queries for Time Series Data
We study similarity queries for time series data where similarity is defined in terms of a set of linear transformations on the Fourier series representation of a sequence. We ha...
Davood Rafiei, Alberto O. Mendelzon
IPPS
2010
IEEE
14 years 8 months ago
Hybrid MPI/Pthreads parallelization of the RAxML phylogenetics code
Abstract--A hybrid MPI/Pthreads parallelization was implemented in the RAxML phylogenetics code. New MPI code was added to the existing Pthreads production code to exploit parallel...
Wayne Pfeiffer, Alexandros Stamatakis
66
Voted
BMCBI
2008
80views more  BMCBI 2008»
14 years 10 months ago
Computational evaluation of TIS annotation for prokaryotic genomes
Background: Accurate annotation of translation initiation sites (TISs) is essential for understanding the translation initiation mechanism. However, the reliability of TIS annotat...
Gang-Qing Hu, Xiaobin Zheng, Li-Ning Ju, Huaiqiu Z...