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» Sequence Database Search Using Jumping Alignments
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IJDAR
2010
110views more  IJDAR 2010»
14 years 8 months ago
Locating and parsing bibliographic references in HTML medical articles
The set of references that typically appear toward the end of journal articles is sometimes, though not always, a field in bibliographic (citation) databases. But even if referenc...
Jie Zou, Daniel X. Le, George R. Thoma
118
Voted
BMCBI
2006
161views more  BMCBI 2006»
14 years 10 months ago
A method for rapid similarity analysis of RNA secondary structures
Background: Owing to the rapid expansion of RNA structure databases in recent years, efficient methods for structure comparison are in demand for function prediction and evolution...
Na Liu, Tianming Wang
183
Voted
VLDB
2005
ACM
397views Database» more  VLDB 2005»
15 years 10 months ago
Concurrency control and recovery for balanced B-link trees
Abstract. In this paper we present new concurrent and recoverable B-link-tree algorithms. Unlike previous algorithms, ours maintain the balance of the B-link tree at all times, so ...
Ibrahim Jaluta, Seppo Sippu, Eljas Soisalon-Soinin...
BMCBI
2004
95views more  BMCBI 2004»
14 years 10 months ago
PCOGR: Phylogenetic COG ranking as an online tool to judge the specificity of COGs with respect to freely definable groups of or
Background: The rapidly increasing number of completely sequenced genomes led to the establishment of the COG-database which, based on sequence homologies, assigns similar protein...
Florian Meereis, Michael Kaufmann
92
Voted
ICDE
2010
IEEE
211views Database» more  ICDE 2010»
15 years 5 months ago
ROX: The robustness of a run-time XQuery optimizer against correlated data
— We demonstrate ROX, a run-time optimizer of XQueries, that focuses on finding the best execution order of XPath steps and relational joins in an XQuery. The problem of join or...
Riham Abdel Kader, Peter A. Boncz, Stefan Manegold...