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» Sequence Database Search Using Jumping Alignments
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91
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BMCBI
2008
133views more  BMCBI 2008»
14 years 10 months ago
CORE_TF: a user-friendly interface to identify evolutionary conserved transcription factor binding sites in sets of co-regulated
Background: The identification of transcription factor binding sites is difficult since they are only a small number of nucleotides in size, resulting in large numbers of false po...
Matthew S. Hestand, Michiel van Galen, Michel P. V...
SIGMOD
2009
ACM
161views Database» more  SIGMOD 2009»
15 years 5 months ago
Dependency-aware reordering for parallelizing query optimization in multi-core CPUs
The state of the art commercial query optimizers employ cost-based optimization and exploit dynamic programming (DP) to find the optimal query execution plan (QEP) without evalua...
Wook-Shin Han, Jinsoo Lee
VLDB
1997
ACM
97views Database» more  VLDB 1997»
15 years 2 months ago
The Complexity of Transformation-Based Join Enumeration
Query optimizers that explore a search space exhaustively using transformation rules usually apply all possible rules on each alternative, and stop when no new information is prod...
Arjan Pellenkoft, César A. Galindo-Legaria,...
SIGMOD
2011
ACM
249views Database» more  SIGMOD 2011»
14 years 29 days ago
FlexMin: a flexible tool for automatic bug isolation in DBMS software
Debugging a database engine is an arduous task due to the complexity of the query workloads and systems. The first step in isolating a bug involves identifying a sequence of step...
Kristi Morton, Nicolas Bruno
76
Voted
BMCBI
2010
117views more  BMCBI 2010»
14 years 10 months ago
Better score function for peptide identification with ETD MS/MS spectra
Background: Tandem mass spectrometry (MS/MS) has become the primary way for protein identification in proteomics. A good score function for measuring the match quality between a p...
Xiaowen Liu, Baozhen Shan, Lei Xin, Bin Ma