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» Sequence Database Search Using Jumping Alignments
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BMCBI
2011
14 years 4 months ago
PheMaDB: A solution for storage, retrieval, and analysis of high throughput phenotype data
Background: OmniLog™ phenotype microarrays (PMs) have the capability to measure and compare the growth responses of biological samples upon exposure to hundreds of growth condit...
Wenling E. Chang, Keri Sarver, Brandon W. Higgs, T...
BMCBI
2010
161views more  BMCBI 2010»
14 years 10 months ago
FRASS: the web-server for RNA structural comparison
Background: The impressive increase of novel RNA structures, during the past few years, demands automated methods for structure comparison. While many algorithms handle only small...
Svetlana Kirillova, Silvio C. E. Tosatto, Oliviero...
ACL
1997
14 years 11 months ago
Paradigmatic Cascades: a Linguistically Sound Model of Pronunciation by Analogy
We present and experimentally evaluate a new model of pronunciation by analogy: the paradigmatic cascades model. Given a pronunciation lexicon, this algorithm first extracts the m...
François Yvon
BMCBI
2005
128views more  BMCBI 2005»
14 years 10 months ago
Transformation and other factors of the peptide mass spectrometry pairwise peak-list comparison process
Background: Biological Mass Spectrometry is used to analyse peptides and proteins. A mass spectrum generates a list of measured mass to charge ratios and intensities of ionised pe...
Witold E. Wolski, Maciej Lalowski, Peter Martus, R...
BMCBI
2007
86views more  BMCBI 2007»
14 years 10 months ago
Tandem mass spectrometry data quality assessment by self-convolution
Background: Many algorithms have been developed for deciphering the tandem mass spectrometry (MS) data sets. They can be essentially clustered into two classes. The first performs...
Keng Wah Choo, Wai Mun Tham