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» Sequence Database Search Using Jumping Alignments
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BMCBI
2005
152views more  BMCBI 2005»
15 years 3 months ago
Improved profile HMM performance by assessment of critical algorithmic features in SAM and HMMER
Background: Profile hidden Markov model (HMM) techniques are among the most powerful methods for protein homology detection. Yet, the critical features for successful modelling ar...
Markus Wistrand, Erik L. L. Sonnhammer
BMCBI
2008
86views more  BMCBI 2008»
15 years 3 months ago
Subfamily specific conservation profiles for proteins based on n-gram patterns
Background: A new algorithm has been developed for generating conservation profiles that reflect the evolutionary history of the subfamily associated with a query sequence. It is ...
John K. Vries, Xiong Liu
SIGMOD
2004
ACM
184views Database» more  SIGMOD 2004»
16 years 3 months ago
Identifying Similarities, Periodicities and Bursts for Online Search Queries
We present several methods for mining knowledge from the query logs of the MSN search engine. Using the query logs, we build a time series for each query word or phrase (e.g., `Th...
Michail Vlachos, Christopher Meek, Zografoula Vage...
ACCV
2007
Springer
15 years 9 months ago
Exploiting Inter-frame Correlation for Fast Video to Reference Image Alignment
Strong temporal correlation between adjacent frames of a video signal has been successfully exploited in standard video compression algorithms. In this work, we show that the tempo...
Arif Mahmood, Sohaib Khan
SIGMOD
2009
ACM
220views Database» more  SIGMOD 2009»
16 years 3 months ago
Keyword search in databases: the power of RDBMS
Keyword search in relational databases (RDBs) has been extensively studied recently. A keyword search (or a keyword query) in RDBs is specified by a set of keywords to explore the...
Lu Qin, Jeffrey Xu Yu, Lijun Chang