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» Sequence Database Search Using Jumping Alignments
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SDMW
2004
Springer
15 years 8 months ago
Using Secret Sharing for Searching in Encrypted Data
When outsourcing data to an untrusted database server, the data should be encrypted. When using thin clients or low-bandwidth networks it is best to perform most of the work at the...
Richard Brinkman, Jeroen Doumen, Willem Jonker
BMCBI
2008
144views more  BMCBI 2008»
15 years 3 months ago
Rule-based knowledge aggregation for large-scale protein sequence analysis of influenza A viruses
Background: The explosive growth of biological data provides opportunities for new statistical and comparative analyses of large information sets, such as alignments comprising te...
Olivo Miotto, Tin Wee Tan, Vladimir Brusic
CDB
2004
Springer
172views Database» more  CDB 2004»
15 years 8 months ago
Constraint Database Solutions to the Genome Map Assembly Problem
Abstract. Long DNA sequences have to be cut using restriction enzymes into small fragments whose lengths and/or nucleotide sequences can be analyzed by currently available technolo...
Viswanathan Ramanathan, Peter Z. Revesz
BIOINFORMATICS
2010
127views more  BIOINFORMATICS 2010»
15 years 3 months ago
Analyzing taxonomic classification using extensible Markov models
Motivation: As next generation sequencing is rapidly adding new genomes, their correct placement in the taxonomy needs verification. However, the current methods for confirming cl...
Rao M. Kotamarti, Michael Hahsler, Douglas Raiford...
EDBT
2009
ACM
277views Database» more  EDBT 2009»
15 years 7 months ago
G-hash: towards fast kernel-based similarity search in large graph databases
Structured data including sets, sequences, trees and graphs, pose significant challenges to fundamental aspects of data management such as efficient storage, indexing, and simila...
Xiaohong Wang, Aaron M. Smalter, Jun Huan, Gerald ...