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» Sequence Database Search Using Jumping Alignments
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NAR
2011
198views Computer Vision» more  NAR 2011»
14 years 6 months ago
PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralo
The growing availability of complete genomic sequences from diverse species has brought about the need to scale up phylogenomic analyses, including the reconstruction of large col...
Jaime Huerta-Cepas, Salvador Capella-Gutiér...
BMCBI
2002
109views more  BMCBI 2002»
15 years 3 months ago
Kangaroo - A pattern-matching program for biological sequences
Background: Biologists are often interested in performing a simple database search to identify proteins or genes that contain a well-defined sequence pattern. Many databases do no...
Doron Betel, Christopher W. V. Hogue
NAR
2011
225views Computer Vision» more  NAR 2011»
14 years 6 months ago
PHOSIDA 2011: the posttranslational modification database
The primary purpose of PHOSIDA (http://www .phosida.com) is to manage posttranslational modification sites of various species ranging from bacteria to human. Since its last report...
Florian Gnad, Jeremy Gunawardena, Matthias Mann 00...
GIS
2008
ACM
16 years 4 months ago
The multi-rule partial sequenced route query
Trip planning search (TPS) represents an important class of queries in Geographic Information Systems (GIS). In many real-world applications, TPS requests are issued with a number...
Haiquan Chen, Wei-Shinn Ku, Min-Te Sun, Roger Zimm...
CLEF
2007
Springer
15 years 9 months ago
Robust Question Answering for Speech Transcripts Using Minimal Syntactic Analysis
Abstract. This paper describes the participation of the Technical University of Catalonia in the CLEF 2007 Question Answering on Speech Transcripts track. For the processing of man...
Pere Comas, Jordi Turmo, Mihai Surdeanu