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» Sequence Database Search Using Jumping Alignments
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BMCBI
2010
152views more  BMCBI 2010»
15 years 3 months ago
A high-throughput de novo sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry
Background: High-resolution tandem mass spectra can now be readily acquired with hybrid instruments, such as LTQ-Orbitrap and LTQ-FT, in high-throughput shotgun proteomics workflo...
Chongle Pan, Byung-Hoon Park, William H. McDonald,...
EDBT
2009
ACM
184views Database» more  EDBT 2009»
15 years 10 months ago
Distributed similarity search in high dimensions using locality sensitive hashing
In this paper we consider distributed K-Nearest Neighbor (KNN) search and range query processing in high dimensional data. Our approach is based on Locality Sensitive Hashing (LSH...
Parisa Haghani, Sebastian Michel, Karl Aberer
BMCBI
2007
142views more  BMCBI 2007»
15 years 3 months ago
Support Vector Machine-based method for predicting subcellular localization of mycobacterial proteins using evolutionary informa
Background: In past number of methods have been developed for predicting subcellular location of eukaryotic, prokaryotic (Gram-negative and Gram-positive bacteria) and human prote...
Mamoon Rashid, Sudipto Saha, Gajendra P. S. Raghav...
BMCBI
2007
142views more  BMCBI 2007»
15 years 3 months ago
SABERTOOTH: protein structural alignment based on a vectorial structure representation
Background: The task of computing highly accurate structural alignments of proteins in very short computation time is still challenging. This is partly due to the complexity of pr...
Florian Teichert, Ugo Bastolla, Markus Porto
BMCBI
2005
130views more  BMCBI 2005»
15 years 3 months ago
Squid - a simple bioinformatics grid
Background: BLAST is a widely used genetic research tool for analysis of similarity between nucleotide and protein sequences. This paper presents a software application entitled &...
Paulo C. Carvalho, Rafael V. Glória, Antoni...