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» Sequence Database Search Using Jumping Alignments
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BMCBI
2008
323views more  BMCBI 2008»
15 years 3 months ago
A compatible exon-exon junction database for the identification of exon skipping events using tandem mass spectrum data
Background: Alternative splicing is an important gene regulation mechanism. It is estimated that about 74% of multi-exon human genes have alternative splicing. High throughput tan...
Fan Mo, Xu Hong, Feng Gao, Lin Du, Jun Wang, Gilbe...
NAR
2002
80views more  NAR 2002»
15 years 2 months ago
Wanda: a database of duplicated fish genes
Comparative genomics has shown that ray-finned fish (Actinopterygii) contain more copies of many genes than other vertebrates. A large number of these additional genes appear to h...
Yves Van de Peer, John Shawe-Taylor, Jayabalan Jos...
NAR
2011
274views Computer Vision» more  NAR 2011»
14 years 10 months ago
A series of PDB related databases for everyday needs
The Protein Data Bank (PDB) is the world-wide repository of macromolecular structure information. We present a series of databases that run parallel to the PDB. Each database hold...
Robbie P. Joosten, Tim A. H. te Beek, Elmar Kriege...
157
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EDBT
2012
ACM
291views Database» more  EDBT 2012»
13 years 5 months ago
Relevance search in heterogeneous networks
Conventional research on similarity search focuses on measuring the similarity between objects with the same type. However, in many real-world applications, we need to measure the...
Chuan Shi, Xiangnan Kong, Philip S. Yu, Sihong Xie...
BIBE
2010
IEEE
143views Bioinformatics» more  BIBE 2010»
15 years 4 months ago
The Effect of Sequence Error and Partial Training Data on BLAST Accuracy
- Metagenomics is the study of environmental samples. Because few tools exist for metagenomic analysis, a natural step has been to utilize the popular homology tool, BLAST, to sear...
Steven D. Essinger, Gail L. Rosen