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» Sequence Database Search Using Jumping Alignments
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NAR
2008
103views more  NAR 2008»
15 years 3 months ago
The Generation Challenge Programme comparative plant stress-responsive gene catalogue
The Generation Challenge Programme (GCP; www.generationcp.org) has developed an online resource documenting stress-responsive genes comparatively across plant species. This public...
Samart Wanchana, Supat Thongjuea, Victor Jun M. Ul...
ICDE
2004
IEEE
155views Database» more  ICDE 2004»
16 years 4 months ago
BIDE: Efficient Mining of Frequent Closed Sequences
Previous studies have presented convincing arguments that a frequent pattern mining algorithm should not mine all frequent patterns but only the closed ones because the latter lea...
Jianyong Wang, Jiawei Han
JDA
2008
87views more  JDA 2008»
15 years 3 months ago
Lossless filter for multiple repetitions with Hamming distance
Similarity search in texts, notably in biological sequences, has received substantial attention in the last few years. Numerous filtration and indexing techniques have been create...
Pierre Peterlongo, Nadia Pisanti, Fréd&eacu...
BMVC
2001
15 years 5 months ago
Graph Matching using Adjacency Matrix Markov Chains
This paper describes a spectral method for graph-matching. We adopt a graphical models viewpoint in which the graph adjacency matrix is taken to represent the transition probabili...
Antonio Robles-Kelly, Edwin R. Hancock
BMCBI
2010
145views more  BMCBI 2010»
15 years 3 months ago
JCoDA: a tool for detecting evolutionary selection
Background: The incorporation of annotated sequence information from multiple related species in commonly used databases (Ensembl, Flybase, Saccharomyces Genome Database, Wormbase...
Steven N. Steinway, Ruth Dannenfelser, Christopher...