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» Sequence Database Search Using Jumping Alignments
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105
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BMCBI
2007
123views more  BMCBI 2007»
15 years 3 months ago
Tracembler - software for in-silico chromosome walking in unassembled genomes
Background: Whole genome shotgun sequencing produces increasingly higher coverage of a genome with random sequence reads. Progressive whole genome assembly and eventual finishing ...
Qunfeng Dong, Matthew D. Wilkerson, Volker Brendel
143
Voted
WOB
2004
103views Bioinformatics» more  WOB 2004»
15 years 4 months ago
An I/O Device Driver for Bioinformatics Tools: the case for BLAST
There are many bioinformatics tools that deal with input/ output (I/O) issues by using filing systems from the most common operating systems, such as Linux or MS Windows. However, ...
Renato Mauro, Sérgio Lifschitz
BMCBI
2006
160views more  BMCBI 2006»
15 years 3 months ago
Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources
Background: In order to improve gene prediction, extrinsic evidence on the gene structure can be collected from various sources of information such as genome-genome comparisons an...
Mario Stanke, Oliver Schöffmann, Burkhard Mor...
NAR
2008
122views more  NAR 2008»
15 years 2 months ago
PlantTFDB: a comprehensive plant transcription factor database
Transcription factors (TFs) play key roles in controlling gene expression. Systematic identification and annotation of TFs, followed by construction of TF databases may serve as u...
Anyuan Guo, Xin Chen, Ge Gao, He Zhang, Qihui Zhu,...
SIGMOD
2010
ACM
231views Database» more  SIGMOD 2010»
15 years 8 months ago
Automatically incorporating new sources in keyword search-based data integration
Scientific data offers some of the most interesting challenges in data integration today. Scientific fields evolve rapidly and accumulate masses of observational and experiment...
Partha Pratim Talukdar, Zachary G. Ives, Fernando ...