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» Sequence Database Search Using Jumping Alignments
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BMCBI
2006
112views more  BMCBI 2006»
15 years 3 months ago
A phylogenomic gene cluster resource: the Phylogenetically Inferred Groups (PhIGs) database
Background: We present here the PhIGs database, a phylogenomic resource for sequenced genomes. Although many methods exist for clustering gene families, very few attempt to create...
Paramvir S. Dehal, Jeffrey L. Boore
124
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BMCBI
2007
175views more  BMCBI 2007»
15 years 3 months ago
CLUSS: Clustering of protein sequences based on a new similarity measure
Background: The rapid burgeoning of available protein data makes the use of clustering within families of proteins increasingly important. The challenge is to identify subfamilies...
Abdellali Kelil, Shengrui Wang, Ryszard Brzezinski...
BMCBI
2006
144views more  BMCBI 2006»
15 years 3 months ago
methBLAST and methPrimerDB: web-tools for PCR based methylation analysis
Background: DNA methylation plays an important role in development and tumorigenesis by epigenetic modification and silencing of critical genes. The development of PCR-based methy...
Filip Pattyn, Jasmien Hoebeeck, Piet Robbrecht, Ev...
ICASSP
2007
IEEE
15 years 9 months ago
Evolutionary Sequence Modeling for Discovery of Peptide Hormones
There are currently a large number of ‘‘orphan’’ G-protein-coupled receptors (GPCRs) whose endogenous ligands (peptide hormones) are unknown. Identification of these pepti...
M. Kemal Sönmez, Lawrence Toll, Nina Zaveri
ICASSP
2010
IEEE
15 years 3 months ago
Using cross-decoder phone coocurrences in phonotactic language recognition
Phonotactic language recognizers are based on the ability of phone decoders to produce phone sequences containing acoustic, phonetic and phonological information, which is partial...
Mikel Peñagarikano, Amparo Varona, Luis Jav...