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» Sequence Database Search Using Jumping Alignments
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RIVF
2008
15 years 4 months ago
Speeding up subset seed algorithm for intensive protein sequence comparison
Abstract--Sequence similarity search is a common and repeated task in molecular biology. The rapid growth of genomic databases leads to the need of speeding up the treatment of thi...
Van Hoa Nguyen, Dominique Lavenier
COCOON
2007
Springer
15 years 9 months ago
Seed-Based Exclusion Method for Non-coding RNA Gene Search
Given an RNA family characterized by conserved sequences and folding constraints, the problem is to search for all the instances of the RNA family in a genomic database. As seed-ba...
Jean-Eudes Duchesne, Mathieu Giraud, Nadia El-Mabr...
SISAP
2010
IEEE
135views Data Mining» more  SISAP 2010»
15 years 1 months ago
Improving the similarity search of tandem mass spectra using metric access methods
In biological applications, the tandem mass spectrometry is a widely used method for determining protein and peptide sequences from an ”in vitro” sample. The sequences are not...
Jiri Novák, Tomás Skopal, David Hoks...
ICIP
1999
IEEE
16 years 4 months ago
A Framework for Measuring Video Similarity and Its Application to Video Query by Example
The usefulness of a video database relies on whether the video of interest can be easily located. To allow exploring, browsing, and retrieving videos according to their visual con...
Yap-Peng Tan, Sanjeev R. Kulkarni, Peter J. Ramadg...
CCECE
2006
IEEE
15 years 9 months ago
Survey of Biological High Performance Computing: Algorithms, Implementations and Outlook Research
During recent years there has been an explosive growth of biological data coming from genome projects, proteomics, protein structure determination, and the rapid expansion in digi...
Nasreddine Hireche, J. M. Pierre Langlois, Gabriel...