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» Sequence Database Search Using Jumping Alignments
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NAR
2006
128views more  NAR 2006»
14 years 10 months ago
Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee
Expresso is a multiple sequence alignment server that aligns sequences using structural information. The user only needs to provide sequences. The server runs BLAST to identify cl...
Fabrice Armougom, Sébastien Moretti, Olivie...
COMAD
2009
14 years 8 months ago
Similarity Search in Moving Object Trajectories
The continuous and rapid advent in mobile and communications technology opens the way for new research areas and new applications. Moving Object Databases(MODs) are among the emer...
Omnia Ossama Hoda, M. O. Mokhtar
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BMCBI
2008
123views more  BMCBI 2008»
14 years 10 months ago
A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences
Background: The structure of many eukaryotic cell regulatory proteins is highly modular. They are assembled from globular domains, segments of natively disordered polypeptides and...
Claudia Chica, Alberto Labarga, Cathryn M. Gould, ...
DKE
2008
91views more  DKE 2008»
14 years 10 months ago
SUSAX: Context-specific searching in XML documents using sequence alignment techniques
Keyword searching while very successful in narrowing down the contents of the Web to the pertaining subset of information, has two primary drawbacks. First, the accuracy of the se...
Kajal T. Claypool
BMCBI
2010
189views more  BMCBI 2010»
14 years 10 months ago
High quality protein sequence alignment by combining structural profile prediction and profile alignment using SABERTOOTH
Background: Protein alignments are an essential tool for many bioinformatics analyses. While sequence alignments are accurate for proteins of high sequence similarity, they become...
Florian Teichert, Jonas Minning, Ugo Bastolla, Mar...