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» Sequence alignment for masquerade detection
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AAAI
2008
15 years 3 days ago
Proactive Intrusion Detection
Machine learning systems are deployed in many adversarial conditions like intrusion detection, where a classifier has to decide whether a sequence of actions come from a legitimat...
Benjamin Liebald, Dan Roth, Neelay Shah, Vivek Sri...
BMCBI
2007
142views more  BMCBI 2007»
14 years 10 months ago
Improving model construction of profile HMMs for remote homology detection through structural alignment
Background: Remote homology detection is a challenging problem in Bioinformatics. Arguably, profile Hidden Markov Models (pHMMs) are one of the most successful approaches in addre...
Juliana S. Bernardes, Alberto M. R. Dávila,...
ACL
2009
14 years 7 months ago
Coordinate Structure Analysis with Global Structural Constraints and Alignment-Based Local Features
We propose a hybrid approach to coordinate structure analysis that combines a simple grammar to ensure consistent global structure of coordinations in a sentence, and features bas...
Kazuo Hara, Masashi Shimbo, Hideharu Okuma, Yuji M...
BMCBI
2006
156views more  BMCBI 2006»
14 years 9 months ago
Detecting the limits of regulatory element conservation and divergence estimation using pairwise and multiple alignments
Background: Molecular evolutionary studies of noncoding sequences rely on multiple alignments. Yet how multiple alignment accuracy varies across sequence types, tree topologies, d...
Daniel A. Pollard, Alan M. Moses, Venky N. Iyer, M...
BMCBI
2010
138views more  BMCBI 2010»
14 years 10 months ago
Sigma-2: Multiple sequence alignment of non-coding DNA via an evolutionary model
Background: While most multiple sequence alignment programs expect that all or most of their input is known to be homologous, and penalise insertions and deletions, this is not a ...
Gayathri Jayaraman, Rahul Siddharthan