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» Sets of k-Independent Strings
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UAI
2004
15 years 13 days ago
Case-Factor Diagrams for Structured Probabilistic Modeling
We introduce a probabilistic formalism subsuming Markov random fields of bounded tree width and probabilistic context free grammars. Our models are based on a representation of Bo...
David A. McAllester, Michael Collins, Fernando Per...
107
Voted
IJHIS
2006
94views more  IJHIS 2006»
14 years 11 months ago
A new fine-grained evolutionary algorithm based on cellular learning automata
In this paper, a new evolutionary computing model, called CLA-EC, is proposed. This model is a combination of a model called cellular learning automata (CLA) and the evolutionary ...
Reza Rastegar, Mohammad Reza Meybodi, Arash Hariri
112
Voted
JMLR
2008
148views more  JMLR 2008»
14 years 11 months ago
Linear-Time Computation of Similarity Measures for Sequential Data
Efficient and expressive comparison of sequences is an essential procedure for learning with sequential data. In this article we propose a generic framework for computation of sim...
Konrad Rieck, Pavel Laskov
NAR
2008
119views more  NAR 2008»
14 years 11 months ago
Phospho.ELM: a database of phosphorylation sites - update 2008
Phospho.ELM is a manually curated database of eukaryotic phosphorylation sites. The resource includes data collected from published literature as well as high-throughput data sets...
Francesca Diella, Cathryn M. Gould, Claudia Chica,...
JCB
2002
111views more  JCB 2002»
14 years 10 months ago
A General Edit Distance between RNA Structures
Arc-annotated sequences are useful in representing the structural information of RNA sequences. In general, RNA secondary and tertiary structures can be represented as a set of ne...
Tao Jiang, Guohui Lin, Bin Ma, Kaizhong Zhang