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» Shape Distributions and Protein Similarity
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BMCBI
2004
265views more  BMCBI 2004»
14 years 9 months ago
ASAView: Database and tool for solvent accessibility representation in proteins
Background: Accessible surface area (ASA) or solvent accessibility of amino acids in a protein has important implications. Knowledge of surface residues helps in locating potentia...
Shandar Ahmad, M. Michael Gromiha, Hamed Fawareh, ...
ICANN
2010
Springer
14 years 8 months ago
Dynamic Shape Learning and Forgetting
In this paper, we present a system capable of dynamically learning shapes in a way that also allows for the dynamic deletion of shapes already learned. It uses a self-balancing Bin...
Nikolaos Tsapanos, Anastasios Tefas, Ioannis Pitas
BMCBI
2010
151views more  BMCBI 2010»
14 years 9 months ago
Using diffusion distances for flexible molecular shape comparison
Background: Many molecules are flexible and undergo significant shape deformation as part of their function, and yet most existing molecular shape comparison (MSC) methods treat t...
Yu-Shen Liu, Qi Li, Guo-Qin Zheng, Karthik Ramani,...
CVPR
2008
IEEE
15 years 11 months ago
Correspondences between parts of shapes with particle filters
Given two shapes, the correspondence between distinct visual features is the basis for most alignment processes and shape similarity measures. This paper presents an approach intr...
Rolf Lakämper, Marc Sobel
106
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BMCBI
2008
200views more  BMCBI 2008»
14 years 9 months ago
Defining functional distances over Gene Ontology
Background: A fundamental problem when trying to define the functional relationships between proteins is the difficulty in quantifying functional similarities, even when well-stru...
Angela del Pozo, Florencio Pazos, Alfonso Valencia