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» Shared memory programming for large scale machines
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JPDC
2007
167views more  JPDC 2007»
14 years 9 months ago
On the design of high-performance algorithms for aligning multiple protein sequences on mesh-based multiprocessor architectures
In this paper, we address the problem of multiple sequence alignment (MSA) for handling very large number of proteins sequences on mesh-based multiprocessor architectures. As the ...
Diana H. P. Low, Bharadwaj Veeravalli, David A. Ba...
BMCBI
2005
130views more  BMCBI 2005»
14 years 9 months ago
Squid - a simple bioinformatics grid
Background: BLAST is a widely used genetic research tool for analysis of similarity between nucleotide and protein sequences. This paper presents a software application entitled &...
Paulo C. Carvalho, Rafael V. Glória, Antoni...
ASPLOS
2009
ACM
15 years 10 months ago
StreamRay: a stream filtering architecture for coherent ray tracing
The wide availability of commodity graphics processors has made real-time graphics an intrinsic component of the human/computer interface. These graphics cores accelerate the z-bu...
Karthik Ramani, Christiaan P. Gribble, Al Davis
PDCN
2004
14 years 11 months ago
Improving http-server performance by adapted multithreading
It is wellknown that http servers can be programmed easier by using multithreading, i.e. each connection is dealt with by a separate thread. It is also known, e.g. from massively ...
Jörg Keller, Olaf Monien
HPDC
2009
IEEE
15 years 4 months ago
TakTuk, adaptive deployment of remote executions
This article deals with TakTuk, a middleware that deploys efficiently parallel remote executions on large scale grids (thousands of nodes). This tool is mostly intended for intera...
Benoit Claudel, Guillaume Huard, Olivier Richard