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GCB
2009
Springer
139views Biometrics» more  GCB 2009»
15 years 1 months ago
Graph-Kernels for the Comparative Analysis of Protein Active Sites
Abstract: Graphs are often used to describe and analyze the geometry and physicochemical composition of biomolecular structures, such as chemical compounds and protein active sites...
Thomas Fober, Marco Mernberger, Ralph Moritz, Eyke...
ESCAPE
2007
Springer
256views Algorithms» more  ESCAPE 2007»
15 years 1 months ago
A More Effective Linear Kernelization for Cluster Editing
In the NP-hard Cluster Editing problem, we have as input an undirected graph G and an integer k 0. The question is whether we can transform G, by inserting and deleting at most k ...
Jiong Guo
ICML
2007
IEEE
15 years 10 months ago
Structural alignment based kernels for protein structure classification
Structural alignments are the most widely used tools for comparing proteins with low sequence similarity. The main contribution of this paper is to derive various kernels on prote...
Sourangshu Bhattacharya, Chiranjib Bhattacharyya, ...
NIPS
2004
14 years 11 months ago
Binet-Cauchy Kernels
We propose a family of kernels based on the Binet-Cauchy theorem and its extension to Fredholm operators. This includes as special cases all currently known kernels derived from t...
S. V. N. Vishwanathan, Alex J. Smola
AAIM
2010
Springer
144views Algorithms» more  AAIM 2010»
15 years 2 months ago
Kernelization for Cycle Transversal Problems
Abstract. We present new kernelization results for the s-cycle transversal problem for s > 3. In particular, we show a 6k2 kernel for 4-cycle transversal and a O(ks−1 ) kernel...
Ge Xia, Yong Zhang