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» Similarity Searching for Multi-Attribute Sequences
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BMCBI
2010
131views more  BMCBI 2010»
14 years 9 months ago
FACT: Functional annotation transfer between proteins with similar feature architectures
Background: The increasing number of sequenced genomes provides the basis for exploring the genetic and functional diversity within the tree of life. Only a tiny fraction of the e...
Tina Koestler, Arndt von Haeseler, Ingo Ebersberge...
CIKM
2005
Springer
15 years 3 months ago
Exact match search in sequence data using suffix trees
We study suitable indexing techniques to support efficient exact match search in large biological sequence databases. We propose a suffix tree (ST) representation, called STA-DF, ...
Mihail Halachev, Nematollaah Shiri, Anand Thamildu...
DATESO
2010
169views Database» more  DATESO 2010»
14 years 7 months ago
Parametrised Hausdorff Distance as a Non-Metric Similarity Model for Tandem Mass Spectrometry
Abstract. Tandem mass spectrometry is a widely used method for protein and peptide sequences identification. Since the mass spectra contain up to 80% of noise and many other inaccu...
Jiri Novák, David Hoksza
WWW
2008
ACM
15 years 10 months ago
Web graph similarity for anomaly detection (poster)
Web graphs are approximate snapshots of the web, created by search engines. Their creation is an error-prone procedure that relies on the availability of Internet nodes and the fa...
Panagiotis Papadimitriou 0002, Ali Dasdan, Hector ...
ISMIR
2005
Springer
123views Music» more  ISMIR 2005»
15 years 3 months ago
Polyphonic Musical Sequence Alignment for Database Search
Finding the best matching database target to a melodic query has been of great interest in the music IR world. The string alignment paradigm works well for this task when comparin...
Bryan Pardo, Manan Sanghi