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BMCBI
2005
156views more  BMCBI 2005»
15 years 1 months ago
DynGO: a tool for visualizing and mining of Gene Ontology and its associations
Background: A large volume of data and information about genes and gene products has been stored in various molecular biology databases. A major challenge for knowledge discovery ...
Hongfang Liu, Zhang-Zhi Hu, Cathy H. Wu
BMCBI
2010
205views more  BMCBI 2010»
15 years 2 months ago
A fast indexing approach for protein structure comparison
Background: Protein structure comparison is a fundamental task in structural biology. While the number of known protein structures has grown rapidly over the last decade, searchin...
Lei Zhang, James Bailey, Arun Siddharth Konagurthu...
SIGMOD
2009
ACM
190views Database» more  SIGMOD 2009»
16 years 2 months ago
DataLens: making a good first impression
When a database query has a large number of results, the user can only be shown one page of results at a time. One popular approach is to rank results such that the "best&quo...
Bin Liu, H. V. Jagadish
BMCBI
2002
133views more  BMCBI 2002»
15 years 1 months ago
Identification and characterization of subfamily-specific signatures in a large protein superfamily by a hidden Markov model app
Background: Most profile and motif databases strive to classify protein sequences into a broad spectrum of protein families. The next step of such database studies should include ...
Kevin Truong, Mitsuhiko Ikura
NAR
2007
152views more  NAR 2007»
15 years 1 months ago
COMPASS server for remote homology inference
COMPASS is a method for homology detection and local alignment construction based on the comparison of multiple sequence alignments (MSAs). The method derives numerical profiles f...
Ruslan Sadreyev, Ming Tang, Bong-Hyun Kim, Nick V....