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BIBM
2007
IEEE
137views Bioinformatics» more  BIBM 2007»
15 years 7 months ago
A Multi-metric Similarity Based Analysis of Microarray Data
Clustering has been shown to be effective in analyzing functional relationships of genes. However, no single clustering method with single distance metric is capable of capturing ...
Fatih Altiparmak, Selnur Erdal, Ozgur Ozturk, Haka...
BMCBI
2008
142views more  BMCBI 2008»
15 years 1 months ago
Optimal neighborhood indexing for protein similarity search
Background: Similarity inference, one of the main bioinformatics tasks, has to face an exponential growth of the biological data. A classical approach used to cope with this data ...
Pierre Peterlongo, Laurent Noé, Dominique L...
BMCBI
2004
150views more  BMCBI 2004»
15 years 1 months ago
SS-Wrapper: a package of wrapper applications for similarity searches on Linux clusters
Background: Large-scale sequence comparison is a powerful tool for biological inference in modern molecular biology. Comparing new sequences to those in annotated databases is a u...
Chunlin Wang, Elliot J. Lefkowitz
BMCBI
2007
135views more  BMCBI 2007»
15 years 1 months ago
Sequence similarity is more relevant than species specificity in probabilistic backtranslation
Background: Backtranslation is the process of decoding a sequence of amino acids into the corresponding codons. All synthetic gene design systems include a backtranslation module....
Alfredo Ferro, Rosalba Giugno, Giuseppe Pigola, Al...
PR
2008
117views more  PR 2008»
15 years 1 months ago
A scale-free distribution of false positives for a large class of audio similarity measures
The "bag-of-frames" approach (BOF) to audio pattern recognition models signals as the long-term statistical distribution of their local spectral features, a prototypical...
Jean-Julien Aucouturier, François Pachet