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NAR
2010
148views more  NAR 2010»
14 years 8 months ago
SIMAP - a comprehensive database of pre-calculated protein sequence similarities, domains, annotations and clusters
The prediction of protein function as well as the reconstruction of evolutionary genesis employing sequence comparison at large is still the most powerful tool in sequence analysi...
Thomas Rattei, Patrick Tischler, Stefan Götz,...
BMCBI
2004
162views more  BMCBI 2004»
15 years 1 months ago
Identifying spatially similar gene expression patterns in early stage fruit fly embryo images: binary feature versus invariant m
Background: Modern developmental biology relies heavily on the analysis of embryonic gene expression patterns. Investigators manually inspect hundreds or thousands of expression p...
Rajalakshmi Gurunathan, Bernard Van Emden, Sethura...
SIGIR
2005
ACM
15 years 7 months ago
SimFusion: measuring similarity using unified relationship matrix
In this paper we use a Unified Relationship Matrix (URM) to represent a set of heterogeneous data objects (e.g., web pages, queries) and their interrelationships (e.g., hyperlinks...
Wensi Xi, Edward A. Fox, Weiguo Fan, Benyu Zhang, ...
SIGMOD
2010
ACM
228views Database» more  SIGMOD 2010»
15 years 6 months ago
Probabilistic string similarity joins
Edit distance based string similarity join is a fundamental operator in string databases. Increasingly, many applications in data cleaning, data integration, and scientific compu...
Jeffrey Jestes, Feifei Li, Zhepeng Yan, Ke Yi
BMCBI
2008
173views more  BMCBI 2008»
15 years 1 months ago
Gene Vector Analysis (Geneva): A unified method to detect differentially-regulated gene sets and similar microarray experiments
Background: Microarray experiments measure changes in the expression of thousands of genes. The resulting lists of genes with changes in expression are then searched for biologica...
Stephen W. Tanner, Pankaj Agarwal