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142
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BMCBI
2011
14 years 10 months ago
nocoRNAc: Characterization of non-coding RNAs in prokaryotes
Background: The interest in non-coding RNAs (ncRNAs) constantly rose during the past few years because of the wide spectrum of biological processes in which they are involved. Thi...
Alexander Herbig, Kay Nieselt
116
Voted
IFIP
2010
Springer
14 years 10 months ago
Bounded Memory Dolev-Yao Adversaries in Collaborative Systems
Abstract. This paper extends existing models for collaborative systems. We investigate how much damage can be done by insiders alone, without collusion with an outside adversary. I...
Max I. Kanovich, Tajana Ban Kirigin, Vivek Nigam, ...
147
Voted
BMCBI
2011
14 years 7 months ago
A Novel And Well-Defined Benchmarking Method For Second Generation Read Mapping
Background: Second generation sequencing technologies yield DNA sequence data at ultra high-throughput. Common to most biological applications is a mapping of the reads to an almo...
Manuel Holtgrewe, Anne-Katrin Emde, David Weese, K...
170
Voted
KDD
2012
ACM
200views Data Mining» more  KDD 2012»
13 years 6 months ago
Vertex neighborhoods, low conductance cuts, and good seeds for local community methods
The communities of a social network are sets of vertices with more connections inside the set than outside. We theoretically demonstrate that two commonly observed properties of s...
David F. Gleich, C. Seshadhri
133
Voted
BMCBI
2007
131views more  BMCBI 2007»
15 years 3 months ago
ISHAPE: new rapid and accurate software for haplotyping
Background: We have developed a new haplotyping program based on the combination of an iterative multiallelic EM algorithm (IEM), bootstrap resampling and a pseudo Gibbs sampler. ...
Olivier Delaneau, Cédric Coulonges, Pierre-...