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» Similarity of Event Sequences
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WWW
2005
ACM
16 years 1 months ago
An adaptive, fast, and safe XML parser based on byte sequences memorization
XML (Extensible Markup Language) processing can incur significant runtime overhead in XML-based infrastructural middleware such as Web service application servers. This paper prop...
Toshiro Takase, Hisashi Miyashita, Toyotaro Suzumu...
102
Voted
CIBB
2008
15 years 2 months ago
Analysis of Kernel Based Protein Classification Strategies Using Pairwise Sequence Alignment Measures
Abstract. We evaluated methods of protein classification that use kernels built from BLAST output parameters. Protein sequences were represented as vectors of parameters (e.g. simi...
Dino Franklin, Somdutta Dhir, Sándor Pongor
DLT
2008
15 years 2 months ago
Relationally Periodic Sequences and Subword Complexity
By the famous theorem of Morse and Hedlund, a word is ultimately periodic if and only if it has bounded subword complexity, i.e., for sufficiently large n, the number of factors of...
Julien Cassaigne, Tomi Kärki, Luca Q. Zamboni
96
Voted
BIBE
2010
IEEE
144views Bioinformatics» more  BIBE 2010»
15 years 1 months ago
Detecting Coevolution of Functionally Related Proteins for Automated Protein Annotation
Alan L. Kwan, Susan K. Dutcher, Gary D. Stormo
105
Voted
BMCBI
2008
164views more  BMCBI 2008»
15 years 23 days ago
Word correlation matrices for protein sequence analysis and remote homology detection
Background: Classification of protein sequences is a central problem in computational biology. Currently, among computational methods discriminative kernel-based approaches provid...
Thomas Lingner, Peter Meinicke