XML (Extensible Markup Language) processing can incur significant runtime overhead in XML-based infrastructural middleware such as Web service application servers. This paper prop...
Abstract. We evaluated methods of protein classification that use kernels built from BLAST output parameters. Protein sequences were represented as vectors of parameters (e.g. simi...
By the famous theorem of Morse and Hedlund, a word is ultimately periodic if and only if it has bounded subword complexity, i.e., for sufficiently large n, the number of factors of...
Background: Classification of protein sequences is a central problem in computational biology. Currently, among computational methods discriminative kernel-based approaches provid...