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BMCBI
2006
179views more  BMCBI 2006»
15 years 1 months ago
Multiscale Hy3S: Hybrid stochastic simulation for supercomputers
Background: Stochastic simulation has become a useful tool to both study natural biological systems and design new synthetic ones. By capturing the intrinsic molecular fluctuation...
Howard Salis, Vassilios Sotiropoulos, Yiannis N. K...
BMCBI
2008
154views more  BMCBI 2008»
15 years 1 months ago
GeNESiS: gene network evolution simulation software
Background: There has been a lot of interest in recent years focusing on the modeling and simulation of Gene Regulatory Networks (GRNs). However, the evolutionary mechanisms that ...
Anton Kratz, Masaru Tomita, Arun Krishnan
BMCBI
2007
103views more  BMCBI 2007»
15 years 1 months ago
Dynamic simulation of regulatory networks using SQUAD
Background: The ambition of most molecular biologists is the understanding of the intricate network of molecular interactions that control biological systems. As scientists uncove...
Alessandro Di Cara, Abhishek Garg, Giovanni De Mic...
MICCAI
2002
Springer
16 years 2 months ago
Macroscopic Modeling of Vascular Systems
Abstract. Angiogenesis, the growth of vascular structures, is an extremely complex biological process which has long puzzled scientists. Better physiological understanding of this ...
Dominik Szczerba, Gábor Székely
DNA
2006
Springer
143views Bioinformatics» more  DNA 2006»
15 years 3 months ago
A Framework for Modeling DNA Based Molecular Systems
Recent successes in building large scale DNA nanostructures and in constructing DNA nanomechanical devices have inspired scientists to design more complex nanoscale systems. The de...
Sudheer Sahu, Bei Wang, John H. Reif