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ISLPED
2007
ACM
57views Hardware» more  ISLPED 2007»
14 years 11 months ago
Resource area dilation to reduce power density in throughput servers
Throughput servers using simultaneous multithreaded (SMT) processors are becoming an important paradigm with products such as Sun's Niagara and IBM Power5. Unfortunately, thr...
Michael D. Powell, T. N. Vijaykumar
BMCBI
2010
183views more  BMCBI 2010»
14 years 9 months ago
SOPRA: Scaffolding algorithm for paired reads via statistical optimization
Background: High throughput sequencing (HTS) platforms produce gigabases of short read (<100 bp) data per run. While these short reads are adequate for resequencing application...
Adel Dayarian, Todd P. Michael, Anirvan M. Sengupt...
BMCBI
2007
153views more  BMCBI 2007»
14 years 9 months ago
Can Clustal-style progressive pairwise alignment of multiple sequences be used in RNA secondary structure prediction?
Background: In ribonucleic acid (RNA) molecules whose function depends on their final, folded three-dimensional shape (such as those in ribosomes or spliceosome complexes), the se...
Amelia B. Bellamy-Royds, Marcel Turcotte
BMCBI
2008
108views more  BMCBI 2008»
14 years 9 months ago
SPRINT: A new parallel framework for R
Background: Microarray analysis allows the simultaneous measurement of thousands to millions of genes or sequences across tens to thousands of different samples. The analysis of t...
Jon Hill, Matthew Hambley, Thorsten Forster, Murie...
90
Voted
BMCBI
2008
103views more  BMCBI 2008»
14 years 9 months ago
Discovering multi-level structures in bio-molecular data through the Bernstein inequality
Background: The unsupervised discovery of structures (i.e. clusterings) underlying data is a central issue in several branches of bioinformatics. Methods based on the concept of s...
Alberto Bertoni, Giorgio Valentini