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IEEEPACT
2005
IEEE
15 years 3 months ago
Exploiting Coarse-Grained Parallelism to Accelerate Protein Motif Finding with a Network Processor
While general-purpose processors have only recently employed chip multiprocessor (CMP) architectures, network processors (NPs) have used heterogeneous multi-core architectures sin...
Ben Wun, Jeremy Buhler, Patrick Crowley
97
Voted
TASLP
2008
140views more  TASLP 2008»
14 years 9 months ago
Acoustic Chord Transcription and Key Extraction From Audio Using Key-Dependent HMMs Trained on Synthesized Audio
We describe an acoustic chord transcription system that uses symbolic data to train hidden Markov models and gives best-of-class frame-level recognition results. We avoid the extre...
Kyogu Lee, Malcolm Slaney
BMCBI
2007
142views more  BMCBI 2007»
14 years 9 months ago
Support Vector Machine-based method for predicting subcellular localization of mycobacterial proteins using evolutionary informa
Background: In past number of methods have been developed for predicting subcellular location of eukaryotic, prokaryotic (Gram-negative and Gram-positive bacteria) and human prote...
Mamoon Rashid, Sudipto Saha, Gajendra P. S. Raghav...
94
Voted
ICDM
2002
IEEE
173views Data Mining» more  ICDM 2002»
15 years 2 months ago
Mining Genes in DNA Using GeneScout
In this paper, we present a new system, called GeneScout, for predicting gene structures in vertebrate genomic DNA. The system contains specially designed hidden Markov models (HM...
Michael M. Yin, Jason Tsong-Li Wang
87
Voted
BMCBI
2006
120views more  BMCBI 2006»
14 years 9 months ago
Integrating protein structures and precomputed genealogies in the Magnum database: Examples with cellular retinoid binding prote
Background: When accurate models for the divergent evolution of protein sequences are integrated with complementary biological information, such as folded protein structures, anal...
Michael E. Bradley, Steven A. Benner