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» Single Run Optimization Using the Reverse-Simulation Method
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BMCBI
2010
155views more  BMCBI 2010»
14 years 12 months ago
FunctSNP: an R package to link SNPs to functional knowledge and dbAutoMaker: a suite of Perl scripts to build SNP databases
Background: Whole genome association studies using highly dense single nucleotide polymorphisms (SNPs) are a set of methods to identify DNA markers associated with variation in a ...
Stephen J. Goodswen, Cedric Gondro, Nathan S. Wats...
BMCBI
2007
152views more  BMCBI 2007»
14 years 11 months ago
Recodon: Coalescent simulation of coding DNA sequences with recombination, migration and demography
Background: Coalescent simulations have proven very useful in many population genetics studies. In order to arrive to meaningful conclusions, it is important that these simulation...
Miguel Arenas, David Posada
GECCO
2006
Springer
132views Optimization» more  GECCO 2006»
15 years 3 months ago
The role of diverse populations in phylogenetic analysis
The most popular approaches for reconstructing phylogenetic trees attempt to solve NP-hard optimization criteria such as maximum parsimony (MP). Currently, the bestperforming heur...
Tiffani L. Williams, Marc L. Smith
BMCBI
2008
228views more  BMCBI 2008»
14 years 12 months ago
Adaptive diffusion kernel learning from biological networks for protein function prediction
Background: Machine-learning tools have gained considerable attention during the last few years for analyzing biological networks for protein function prediction. Kernel methods a...
Liang Sun, Shuiwang Ji, Jieping Ye
COMPGEOM
2005
ACM
15 years 1 months ago
On the exact computation of the topology of real algebraic curves
We consider the problem of computing a representation of the plane graph induced by one (or more) algebraic curves in the real plane. We make no assumptions about the curves, in p...
Raimund Seidel, Nicola Wolpert