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» Single Run Optimization Using the Reverse-Simulation Method
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CIKM
2007
Springer
15 years 5 months ago
A dual-view approach to interactive network visualization
Visualizing network data, from tree structures to arbitrarily connected graphs, is a difficult problem in information visualization. A large part of the problem is that in network...
Galileo Namata, Brian Staats, Lise Getoor, Ben Shn...
BCS
2008
15 years 1 months ago
Beatbox - A Computer Simulation Environment for Computational Biology of the Heart
Despite over a century's study, the trigger mechanisms of cardiac arrhythmias are poorly understood. Even modern experimental methods do not provide sufficient temporal and s...
Ross McFarlane, Irina V. Biktasheva
BMCBI
2006
179views more  BMCBI 2006»
14 years 11 months ago
Multiscale Hy3S: Hybrid stochastic simulation for supercomputers
Background: Stochastic simulation has become a useful tool to both study natural biological systems and design new synthetic ones. By capturing the intrinsic molecular fluctuation...
Howard Salis, Vassilios Sotiropoulos, Yiannis N. K...
BMCBI
2007
144views more  BMCBI 2007»
14 years 11 months ago
Accelerated search for biomolecular network models to interpret high-throughput experimental data
Background: The functions of human cells are carried out by biomolecular networks, which include proteins, genes, and regulatory sites within DNA that encode and control protein e...
Suman Datta, Bahrad A. Sokhansanj
BMCBI
2004
141views more  BMCBI 2004»
14 years 11 months ago
Estimates of statistical significance for comparison of individual positions in multiple sequence alignments
Background: Profile-based analysis of multiple sequence alignments (MSA) allows for accurate comparison of protein families. Here, we address the problems of detecting statistical...
Ruslan Sadreyev, Nick V. Grishin