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PPOPP
2009
ACM
16 years 3 months ago
Mapping parallelism to multi-cores: a machine learning based approach
The efficient mapping of program parallelism to multi-core processors is highly dependent on the underlying architecture. This paper proposes a portable and automatic compiler-bas...
Zheng Wang, Michael F. P. O'Boyle
RECOMB
2003
Springer
16 years 3 months ago
Accurate detection of very sparse sequence motifs
Protein sequence alignments are more reliable the shorter the evolutionary distance. Here, we align distantly related proteins using many closely spaced intermediate sequences as ...
Andreas Heger, Michael Lappe, Liisa Holm
PERCOM
2005
ACM
16 years 2 months ago
TinyLIME: Bridging Mobile and Sensor Networks through Middleware
In the rapidly developing field of sensor networks, bridging the gap between the applications and the hardware presents a major challenge. Although middleware is one solution, it ...
Carlo Curino, Matteo Giani, Marco Giorgetta, Aless...
SOSP
2003
ACM
15 years 12 months ago
Model-carrying code: a practical approach for safe execution of untrusted applications
This paper presents a new approach called model-carrying code (MCC) for safe execution of untrusted code. At the heart of MCC is the idea that untrusted code comes equipped with a...
R. Sekar, V. N. Venkatakrishnan, Samik Basu, Sande...
IPPS
2009
IEEE
15 years 9 months ago
Accelerating HMMer on FPGAs using systolic array based architecture
HMMer is a widely-used bioinformatics software package that uses profile HMMs (Hidden Markov Models) to model the primary structure consensus of a family of protein or nucleic aci...
Yanteng Sun, Peng Li, Guochang Gu, Yuan Wen, Yuan ...
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