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» Software Quality Improvement Via Pattern Matching
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RECOMB
2003
Springer
15 years 10 months ago
Designing seeds for similarity search in genomic DNA
Large-scale comparison of genomic DNA is of fundamental importance in annotating functional elements of genomes. To perform large comparisons efficiently, BLAST (Methods: Companio...
Jeremy Buhler, Uri Keich, Yanni Sun
BMCBI
2010
117views more  BMCBI 2010»
14 years 9 months ago
Better score function for peptide identification with ETD MS/MS spectra
Background: Tandem mass spectrometry (MS/MS) has become the primary way for protein identification in proteomics. A good score function for measuring the match quality between a p...
Xiaowen Liu, Baozhen Shan, Lei Xin, Bin Ma
BMCBI
2008
123views more  BMCBI 2008»
14 years 9 months ago
A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences
Background: The structure of many eukaryotic cell regulatory proteins is highly modular. They are assembled from globular domains, segments of natively disordered polypeptides and...
Claudia Chica, Alberto Labarga, Cathryn M. Gould, ...
WWW
2005
ACM
15 years 10 months ago
Adaptive query routing in peer web search
An unstructured peer network application was proposed to address the query forwarding problem of distributed search engines and scalability limitations of centralized search engin...
Le-Shin Wu, Ruj Akavipat, Filippo Menczer
AICCSA
2006
IEEE
101views Hardware» more  AICCSA 2006»
15 years 3 months ago
Refactoring Tools and Complementary Techniques
Poorly designed software systems are difficult to understand and maintain. Modifying code in one place could lead to unwanted repercussions elsewhere due to high coupling. Adding ...
Martin Drozdz, Derrick G. Kourie, Bruce W. Watson,...