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AGTIVE
2003
Springer
15 years 10 months ago
Integrating Graph Rewriting and Standard Software Tools
OptimixJ is a graph rewrite tool that can be embedded easily into the standard software process. Applications and models can be developed in Java or UML and extended by graph rewri...
Uwe Aßmann, Johan Lövdahl
BMCBI
2007
152views more  BMCBI 2007»
15 years 5 months ago
PASSIM - an open source software system for managing information in biomedical studies
Background: One of the crucial aspects of day-to-day laboratory information management is collection, storage and retrieval of information about research subjects and biomedical s...
Juris Viksna, Edgars Celms, Martins Opmanis, Karli...
BMCBI
2004
323views more  BMCBI 2004»
15 years 4 months ago
Biochemical Network Stochastic Simulator (BioNetS): software for stochastic modeling of biochemical networks
Background: Intrinsic fluctuations due to the stochastic nature of biochemical reactions can have large effects on the response of biochemical networks. This is particularly true ...
David Adalsteinsson, David McMillen, Timothy C. El...
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SELMAS
2004
Springer
15 years 10 months ago
A Software Framework for Automated Negotiation
If agents are to negotiate automatically with one another they must share a negotiation mechanism, specifying what possible actions each party can take at any given time, when nego...
Claudio Bartolini, Chris Preist, Nicholas R. Jenni...
BMCBI
2010
137views more  BMCBI 2010»
15 years 5 months ago
Biana: a software framework for compiling biological interactions and analyzing networks
Background: The analysis and usage of biological data is hindered by the spread of information across multiple repositories and the difficulties posed by different nomenclature sy...
Javier Garcia-Garcia, Emre Guney, Ramon Aragues, J...