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» Solutions to Computational Problems Through Gene Assembly
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DNA
2007
Springer
107views Bioinformatics» more  DNA 2007»
15 years 4 months ago
Solutions to Computational Problems Through Gene Assembly
Abstract. Gene assembly in ciliates is an impressive computational process. Ciliates have a unique way of storing their genetic information in two fundamentally different forms wi...
Artiom Alhazov, Ion Petre, Vladimir Rogojin
87
Voted
CPM
2005
Springer
97views Combinatorics» more  CPM 2005»
15 years 3 months ago
On the Complexity of Sparse Exon Assembly
Gene structure prediction is one of the most important problems in computational molecular biology. It involves two steps: the first is finding the evidence (e.g. predicting spl...
Carmel Kent, Gad M. Landau, Michal Ziv-Ukelson
109
Voted
BMCBI
2007
159views more  BMCBI 2007»
14 years 10 months ago
Computational genes: a tool for molecular diagnosis and therapy of aberrant mutational phenotype
Background: A finite state machine manipulating information-carrying DNA strands can be used to perform autonomous molecular-scale computations at the cellular level. Results: We ...
Israel Mark Martínez-Pérez, Gong Zha...
UC
2007
Springer
15 years 4 months ago
Computing Through Gene Assembly
Tseren-Onolt Ishdorj, Ion Petre
FUIN
2008
96views more  FUIN 2008»
14 years 10 months ago
Computational Efficiency of Intermolecular Gene Assembly
In this paper, we investigate the computational efficiency of gene rearrangement operations found in ciliates, a type of unicellular organisms. We show how the so-called guided re...
Tseren-Onolt Ishdorj, Remco Loos, Ion Petre