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RECOMB
2010
Springer
15 years 4 months ago
Dense Subgraphs with Restrictions and Applications to Gene Annotation Graphs
Abstract. In this paper, we focus on finding complex annotation patterns representing novel and interesting hypotheses from gene annotation data. We define a generalization of th...
Barna Saha, Allison Hoch, Samir Khuller, Louiqa Ra...
AI
2006
Springer
14 years 10 months ago
Cut-and-solve: An iterative search strategy for combinatorial optimization problems
Branch-and-bound and branch-and-cut use search trees to identify optimal solutions to combinatorial optimization problems. In this paper, we introduce an iterative search strategy...
Sharlee Climer, Weixiong Zhang
ICALP
1995
Springer
15 years 1 months ago
Parallel Algorithms with Optimal Speedup for Bounded Treewidth
We describe the rst parallel algorithm with optimal speedup for constructing minimum-width tree decompositions of graphs of bounded treewidth. On n-vertex input graphs, the algori...
Hans L. Bodlaender, Torben Hagerup
SIAMCOMP
2000
118views more  SIAMCOMP 2000»
14 years 9 months ago
On Bipartite Drawings and the Linear Arrangement Problem
The bipartite crossing number problem is studied, and a connection between this problem and the linear arrangement problem is established. It is shown that when the arboricity is ...
Farhad Shahrokhi, Ondrej Sýkora, Lás...
IFL
1997
Springer
136views Formal Methods» more  IFL 1997»
15 years 2 months ago
Fully Persistent Graphs - Which One To Choose?
Functional programs, by nature, operate on functional, or persistent, data structures. Therefore, persistent graphs are a prerequisite to express functional graph algorithms. In th...
Martin Erwig