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BIOINFORMATICS
2000
149views more  BIOINFORMATICS 2000»
15 years 1 months ago
MaxSub: an automated measure for the assessment of protein structure prediction quality
Motivation: Evaluating the accuracy of predicted models is critical for assessing structure prediction methods. Because this problem is not trivial, a large number of different as...
Naomi Siew, Arne Elofsson, Leszek Rychlewski, Dani...
BMCBI
2002
108views more  BMCBI 2002»
15 years 1 months ago
A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure
Background: Covariance models (CMs) are probabilistic models of RNA secondary structure, analogous to profile hidden Markov models of linear sequence. The dynamic programming algo...
Sean R. Eddy
BMCBI
2002
120views more  BMCBI 2002»
15 years 1 months ago
tacg - a grep for DNA
Background: Pattern matching is the core of bioinformatics; it is used in database searching, restriction enzyme mapping, and finding open reading frames. It is done repeatedly ov...
Harry Mangalam
BMCBI
2002
126views more  BMCBI 2002»
15 years 1 months ago
RIO: Analyzing proteomes by automated phylogenomics using resampled inference of orthologs
Background: When analyzing protein sequences using sequence similarity searches, orthologous sequences (that diverged by speciation) are more reliable predictors of a new protein&...
Christian M. Zmasek, Sean R. Eddy
CAI
2002
Springer
15 years 1 months ago
The Computing and Data Grid Approach: Infrastructure for Distributed Science Applications
Grid technology has evolved over the past several years to provide the services and infrastructure needed for building "virtual" systems and organizations. With this Gri...
William E. Johnston
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