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BMCBI
2006
126views more  BMCBI 2006»
14 years 12 months ago
Genomes as geography: using GIS technology to build interactive genome feature maps
Background: Many commonly used genome browsers display sequence annotations and related attributes as horizontal data tracks that can be toggled on and off according to user prefe...
Mary E. Dolan, Constance C. Holden, M. Kate Beard,...
IMC
2006
ACM
15 years 5 months ago
On unbiased sampling for unstructured peer-to-peer networks
This paper addresses the difficult problem of selecting representative samples of peer properties (e.g., degree, link bandwidth, number of files shared) in unstructured peer-to-p...
Daniel Stutzbach, Reza Rejaie, Nick G. Duffield, S...
BMCBI
2007
139views more  BMCBI 2007»
14 years 12 months ago
Significance analysis of microarray transcript levels in time series experiments
Background: Microarray time series studies are essential to understand the dynamics of molecular events. In order to limit the analysis to those genes that change expression over ...
Barbara Di Camillo, Gianna Toffolo, Sreekumaran K....
BIBE
2007
IEEE
128views Bioinformatics» more  BIBE 2007»
15 years 6 months ago
QOMA2: Optimizing the alignment of many sequences
Abstract—We consider the problem of aligning multiple protein sequences with the goal of maximizing the SP (Sum-of-Pairs) score, when the number of sequences is large. The QOMA (...
Xu Zhang, Tamer Kahveci
SC
2009
ACM
15 years 6 months ago
Scalable temporal order analysis for large scale debugging
We present a scalable temporal order analysis technique that supports debugging of large scale applications by classifying MPI tasks based on their logical program execution order...
Dong H. Ahn, Bronis R. de Supinski, Ignacio Laguna...