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ITNG
2007
IEEE
15 years 6 months ago
Sorting by Block-Interchanges and Signed Reversals
A block-interchange is a rearrangement event that exchanges two, not necessarily consecutive, contiguous regions in a genome, maintaining the original orientation. Signed reversal...
Cleber V. G. Mira, Joao Meidanis
77
Voted
IPL
2008
86views more  IPL 2008»
14 years 11 months ago
A more efficient algorithm for perfect sorting by reversals
We describe a new algorithm for the problem of perfect sorting a signed permutation by reversals. The worst-case time complexity of this algorithm is parameterized by the maximum p...
Sèverine Bérard, Cedric Chauve, Chri...
94
Voted
DAM
2007
120views more  DAM 2007»
14 years 11 months ago
Advances on sorting by reversals
Theproblemofsortingsignedpermutationsbyreversalsisinspiredbygenomerearrangementproblemsincomputationalmolecular biology. Given two genomes represented as signed permutations of th...
Eric Tannier, Anne Bergeron, Marie-France Sagot
MFCS
2005
Springer
15 years 5 months ago
Approximating Reversal Distance for Strings with Bounded Number of Duplicates
For a string A = a1 . . . an, a reversal ρ(i, j), 1 ≤ i < j ≤ n, transforms the string A into a string A = a1 . . . ai−1ajaj−1 . . . aiaj+1 . . . an, that is, the reve...
Petr Kolman
RECOMB
2006
Springer
15 years 12 months ago
Sorting by Weighted Reversals, Transpositions, and Inverted Transpositions
Abstract. During evolution, genomes are subject to genome rearrangements that alter the ordering and orientation of genes on the chromosomes. If a genome consists of a single chrom...
Martin Bader, Enno Ohlebusch