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» Sorting suffixes of two-pattern strings
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103
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STRINGOLOGY
2004
14 years 11 months ago
Sorting suffixes of two-pattern strings
Recently, several authors presented linear recursive algorithms for sorting suffixes of a string. All these algorithms employ a similar three-step approach, based on an initial di...
Frantisek Franek, William F. Smyth
96
Voted
SODA
1990
ACM
173views Algorithms» more  SODA 1990»
14 years 11 months ago
Suffix Arrays: A New Method for On-Line String Searches
A new and conceptually simple data structure, called a suffix array, for on-line string searches is introduced in this paper. Constructing and querying suffix arrays is reduced to...
Udi Manber, Gene Myers
103
Voted
ICALP
2007
Springer
15 years 2 months ago
In-Place Suffix Sorting
Given string T = T[1, . . . , n], the suffix sorting problem is to lexicographically sort the suffixes T[i, . . . , n] for all i. This problem is central to the construction of suf...
Gianni Franceschini, S. Muthukrishnan
70
Voted
ALGORITHMICA
1999
112views more  ALGORITHMICA 1999»
14 years 10 months ago
Suffix Trees on Words
We discuss an intrinsic generalization of the suffix tree, designed to index a string of length n which has a natural partitioning into m multicharacter substrings or words. This ...
Arne Andersson, N. Jesper Larsson, Kurt Swanson
CIKM
2008
Springer
15 years 5 days ago
A new method for indexing genomes using on-disk suffix trees
We propose a new method to build persistent suffix trees for indexing the genomic data. Our algorithm DiGeST (Disk-Based Genomic Suffix Tree) improves significantly over previous ...
Marina Barsky, Ulrike Stege, Alex Thomo, Chris Upt...