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BMCBI
2011
12 years 10 months ago
Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
Background: The Smith-Waterman algorithm for local sequence alignment is more sensitive than heuristic methods for database searching, but also more time-consuming. The fastest ap...
Torbjørn Rognes
BIOINFORMATICS
2012
11 years 8 months ago
Epigenetic priors for identifying active transcription factor binding sites
Motivation Accurate knowledge of the genome-wide binding of transcription factors in a particular cell type or under a particular condition is necessary for understanding transcri...
Gabriel Cuellar-Partida, Fabian A. Buske, Robert C...
ICSE
2012
IEEE-ACM
11 years 8 months ago
WhoseFault: Automatic developer-to-fault assignment through fault localization
—This paper describes a new technique, which automatically selects the most appropriate developers for fixing the fault represented by a failing test case, and provides a diagno...
Francisco Servant, James A. Jones
CODES
2005
IEEE
13 years 12 months ago
Spatial division multiplexing: a novel approach for guaranteed throughput on NoCs
To ensure low power consumption while maintaining flexibility and performance, future Systems-on-Chip (SoC) will combine several types of processor cores and data memory units of...
Anthony Leroy, Paul Marchal, Adelina Shickova, Fra...