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BMCBI
2010
156views more  BMCBI 2010»
14 years 9 months ago
PeakAnalyzer: Genome-wide annotation of chromatin binding and modification loci
Background: Functional genomic studies involving high-throughput sequencing and tiling array applications, such as ChIP-seq and ChIP-chip, generate large numbers of experimentally...
Mali Salmon-Divon, Heidi Dvinge, Kairi Tammoja, Pa...
SIGMOD
2008
ACM
116views Database» more  SIGMOD 2008»
15 years 9 months ago
SPADE: the system s declarative stream processing engine
In this paper, we present Spade - the System S declarative stream processing engine. System S is a large-scale, distributed data stream processing middleware under development at ...
Bugra Gedik, Henrique Andrade, Kun-Lung Wu, Philip...
GECCO
2006
Springer
162views Optimization» more  GECCO 2006»
15 years 1 months ago
Improving evolutionary real-time testing
Embedded systems are often used in a safety-critical context, e.g. in airborne or vehicle systems. Typically, timing constraints must be satisfied so that real-time embedded syste...
Marouane Tlili, Stefan Wappler, Harmen Sthamer
BMCBI
2005
120views more  BMCBI 2005»
14 years 9 months ago
SpectralNET - an application for spectral graph analysis and visualization
Background: Graph theory provides a computational framework for modeling a variety of datasets including those emerging from genomics, proteomics, and chemical genetics. Networks ...
Joshua J. Forman, Paul A. Clemons, Stuart L. Schre...
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TIT
2010
111views Education» more  TIT 2010»
14 years 4 months ago
Directly lower bounding the information capacity for channels with I.I.D.deletions and duplications
We directly lower bound the information capacity for channels with i.i.d. deletions and duplications. Our approach differs from previous work in that we focus on the information ca...
Adam Kirsch, Eleni Drinea