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» Source Coding Scheme for Multiple Sequence Alignments
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BMCBI
2010
121views more  BMCBI 2010»
15 years 3 months ago
MS4 - Multi-Scale Selector of Sequence Signatures: An alignment-free method for classification of biological sequences
Background: While multiple alignment is the first step of usual classification schemes for biological sequences, alignment-free methods are being increasingly used as alternatives...
Eduardo Corel, Florian Pitschi, Ivan Laprevotte, G...
DATAMINE
2006
142views more  DATAMINE 2006»
15 years 3 months ago
Sequential Pattern Mining in Multi-Databases via Multiple Alignment
To efficiently find global patterns from a multi-database, information in each local database must first be mined and summarized at the local level. Then only the summarized infor...
Hye-Chung Kum, Joong Hyuk Chang, Wei Wang 0010
BMCBI
2006
117views more  BMCBI 2006»
15 years 3 months ago
Incorporating background frequency improves entropy-based residue conservation measures
Background: Several entropy-based methods have been developed for scoring sequence conservation in protein multiple sequence alignments. High scoring amino acid positions may corr...
Kai Wang, Ram Samudrala
GLOBECOM
2008
IEEE
15 years 9 months ago
Generalized Capacity and Source-Channel Coding for Packet Erasure Channels
— We study the transmission of a stationary ergodic Gaussian source over a packet erasure channel, which is a composite channel with degraded states. A broadcast channel code can...
Yifan Liang, Andrea J. Goldsmith, Michelle Effros
BMCBI
2010
145views more  BMCBI 2010»
15 years 3 months ago
JCoDA: a tool for detecting evolutionary selection
Background: The incorporation of annotated sequence information from multiple related species in commonly used databases (Ensembl, Flybase, Saccharomyces Genome Database, Wormbase...
Steven N. Steinway, Ruth Dannenfelser, Christopher...