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» Source Coding Scheme for Multiple Sequence Alignments
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BMCBI
2010
121views more  BMCBI 2010»
14 years 11 months ago
MS4 - Multi-Scale Selector of Sequence Signatures: An alignment-free method for classification of biological sequences
Background: While multiple alignment is the first step of usual classification schemes for biological sequences, alignment-free methods are being increasingly used as alternatives...
Eduardo Corel, Florian Pitschi, Ivan Laprevotte, G...
DATAMINE
2006
142views more  DATAMINE 2006»
14 years 11 months ago
Sequential Pattern Mining in Multi-Databases via Multiple Alignment
To efficiently find global patterns from a multi-database, information in each local database must first be mined and summarized at the local level. Then only the summarized infor...
Hye-Chung Kum, Joong Hyuk Chang, Wei Wang 0010
BMCBI
2006
117views more  BMCBI 2006»
14 years 11 months ago
Incorporating background frequency improves entropy-based residue conservation measures
Background: Several entropy-based methods have been developed for scoring sequence conservation in protein multiple sequence alignments. High scoring amino acid positions may corr...
Kai Wang, Ram Samudrala
GLOBECOM
2008
IEEE
15 years 6 months ago
Generalized Capacity and Source-Channel Coding for Packet Erasure Channels
— We study the transmission of a stationary ergodic Gaussian source over a packet erasure channel, which is a composite channel with degraded states. A broadcast channel code can...
Yifan Liang, Andrea J. Goldsmith, Michelle Effros
BMCBI
2010
145views more  BMCBI 2010»
14 years 11 months ago
JCoDA: a tool for detecting evolutionary selection
Background: The incorporation of annotated sequence information from multiple related species in commonly used databases (Ensembl, Flybase, Saccharomyces Genome Database, Wormbase...
Steven N. Steinway, Ruth Dannenfelser, Christopher...