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BIBM
2007
IEEE
132views Bioinformatics» more  BIBM 2007»
15 years 4 months ago
A Divide-and-Conquer Implementation of Three Sequence Alignment and Ancestor Inference
In this paper, we present an algorithm to simultaneously align three biological sequences with affine gap model and infer their common ancestral sequence. Our algorithm can be fu...
Feng Yue, Jijun Tang
DASFAA
2007
IEEE
221views Database» more  DASFAA 2007»
15 years 4 months ago
TwigList : Make Twig Pattern Matching Fast
Twig pattern matching problem has been widely studied in recent years. Give an XML tree T . A twig-pattern matching query, Q, represented as a query tree, is to find all the occur...
Lu Qin, Jeffrey Xu Yu, Bolin Ding
ICDM
2007
IEEE
99views Data Mining» more  ICDM 2007»
15 years 4 months ago
Optimizing Frequency Queries for Data Mining Applications
Data mining algorithms use various Trie and bitmap-based representations to optimize the support (i.e., frequency) counting performance. In this paper, we compare the memory requi...
Hassan H. Malik, John R. Kender
IEEEPACT
2007
IEEE
15 years 4 months ago
Performance Portable Optimizations for Loops Containing Communication Operations
Effective use of communication networks is critical to the performance and scalability of parallel applications. Partitioned Global Address Space languages like UPC bring the pro...
Costin Iancu, Wei Chen, Katherine A. Yelick
INFOCOM
2007
IEEE
15 years 4 months ago
Packet Loss Characterization in WiFi-Based Long Distance Networks
— Despite the increasing number of WiFi-based Long Distance (WiLD) network deployments, there is a lack of understanding of how WiLD networks perform in practice. In this paper, ...
Anmol Sheth, Sergiu Nedevschi, Rabin K. Patra, Son...