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    » Sparsification of RNA Structure Prediction Including Pseudok...
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    WABI
    2007
    Springer
    99views Bioinformatics» more  WABI 2007»
    HFold: RNA Pseudoknotted Secondary Structure Prediction Using Hierarchical Folding
    15 years 3 months ago
    HFold: RNA Pseudoknotted Secondary Structure Prediction Using Hierarchical Folding
    Download  www.stanford.edu
    Hosna Jabbari, Anne Condon, Ana Pop, Cristina Pop,...
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    BIOINFORMATICS
    2008
    126views more  BIOINFORMATICS 2008»
    FlexStem: improving predictions of RNA secondary structures with pseudoknots by reducing the search space
    14 years 9 months ago
    FlexStem: improving predictions of RNA secondary structures with pseudoknots by reducing the search space
    Download  www.jdl.ac.cn
    Xiang Chen, Simin He, Dongbo Bu, Fa Zhang, Zhiyong...
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    BIOINFORMATICS
    2004
    77views more  BIOINFORMATICS 2004»
    An Iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots
    14 years 9 months ago
    An Iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots
    Download  www.cs.wustl.edu
    Jianhua Ruan, Gary D. Stormo, Weixiong Zhang
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    RECOMB
    2009
    Springer
    126views Computational Biology» more  RECOMB 2009»
    Lifting Prediction to Alignment of RNA Pseudoknots
    15 years 10 months ago
    Lifting Prediction to Alignment of RNA Pseudoknots
    Download  www.bioinf.uni-freiburg.de
    Prediction and alignment of RNA pseudoknot structures are NP-hard. Nevertheless, several efficient prediction algorithms by dynamic programming have been proposed for restricted cl...
    Mathias Möhl, Rolf Backofen, Sebastian Will
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    TCBB
    2010
    114views more  TCBB 2010»
    Cache-Oblivious Dynamic Programming for Bioinformatics
    14 years 7 months ago
    Cache-Oblivious Dynamic Programming for Bioinformatics
    Download  www.cs.utexas.edu
    — We present efficient cache-oblivious algorithms for some well-studied string problems in bioinformatics including the longest common subsequence, global pairwise sequence alig...
    Rezaul Alam Chowdhury, Hai-son Le, Vijaya Ramachan...
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